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precision_oncology_genomic_variant_analysis

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train · 31 rows

sample_id string	chromosome string	position int64	reference_allele string	variant_allele string	mutation_type string	pathogenicity_score float64	clinical_significance string	variant_allele_frequency float64	read_depth int64
ONC-001	chr1	115,256,529	T	A	Missense	0.92	Pathogenic	0.45	450
ONC-002	chr7	55,242,465	G	C	Missense	0.88	Likely_Pathogenic	0.32	380
ONC-003	chr13	32,890,664	C	T	Nonsense	0.98	Pathogenic	0.51	520
ONC-004	chr17	7,577,121	G	A	Frameshift	0.95	Pathogenic	0.28	290
ONC-005	chr10	89,623,101	A	G	Splice_Site	0.81	VUS	0.12	180
ONC-006	chrX	153,295,431	T	C	Synonymous	0.05	Benign	0.48	610
ONC-007	chr2	209,113,112	C	G	Missense	0.42	VUS	0.15	405
ONC-008	chr4	153,245,452	G	T	Missense	0.76	Likely_Pathogenic	0.38	325
ONC-009	chr11	108,115,622	A	C	Stop_Loss	0.91	Pathogenic	0.42	485
ONC-010	chr12	25,398,284	C	T	Missense	0.94	Pathogenic	0.55	540
ONC-011	chr1	156,108,521	G	A	Intronic	0.02	Benign	0.5	600
ONC-012	chr14	105,235,684	T	G	Missense	0.55	VUS	0.18	255
ONC-013	chr9	133,748,283	A	T	Nonsense	0.99	Pathogenic	0.35	310
ONC-014	chr5	112,175,231	C	G	Missense	0.85	Pathogenic	0.44	475
ONC-015	chr19	11,025,232	G	C	Frameshift	0.97	Pathogenic	0.22	340
ONC-016	chr3	178,936,091	T	A	Missense	0.89	Pathogenic	0.39	415
ONC-017	chr16	2,115,243	C	T	Splice_Site	0.78	Likely_Pathogenic	0.25	280
ONC-018	chr20	62,345,672	A	G	Missense	0.12	Benign	0.49	580
ONC-019	chr22	29,083,745	G	A	Missense	0.68	VUS	0.29	360
ONC-020	chr6	152,453,671	C	T	Intronic	0.01	Benign	0.52	650
ONC-021	chr8	128,748,315	A	C	Missense	0.93	Pathogenic	0.41	490
ONC-022	chr15	40,654,321	T	G	Nonsense	0.96	Pathogenic	0.33	395
ONC-023	chr18	48,575,123	C	A	Missense	0.48	VUS	0.14	210
ONC-024	chr21	36,254,189	G	T	Frameshift	0.99	Pathogenic	0.2	330
ONC-025	chr7	116,412,043	A	G	Missense	0.82	Likely_Pathogenic	0.36	420
ONC-026	chr10	123,241,567	T	C	Synonymous	0.04	Benign	0.46	590
ONC-027	chr12	121,804,703	C	G	Missense	0.72	Likely_Pathogenic	0.27	355
ONC-028	chr17	37,844,393	G	A	Missense	0.95	Pathogenic	0.4	505
ONC-029	chr2	204,123,567	A	T	Intronic	0.03	Benign	0.51	620
ONC-030	chr4	1,807,218	C	G	Missense	0.98	Pathogenic	0.47	445
ONC-031	chr1	24,895,642	T	C	Missense	0.51	VUS	0.19	275

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