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Protein Secondary Structure Prediction
Model
3-layer BiLSTM trained for Q8 secondary structure prediction.
Dataset
NPPE Protein Secondary Structure Dataset.
Architecture
- Embedding: 64
- BiLSTM: 3 layers, hidden size 128
- Dropout: 0.3
Training
- Optimizer: Adam
- Learning Rate: 5e-4 → 1e-4 (Cosine Annealing)
- Epochs: 12
Inference
from model import BiLSTM
import torch
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